Index

A

adata_stellar() (in module spacec.tools)

B

BC_projection() (in module spacec.plotting)

C

catplot() (in module spacec.plotting) cell_segmentation() (in module spacec.tools) check_for_gpu() (in module spacec.helperfunctions) clustering() (in module spacec.tools) cn_exp_heatmap() (in module spacec.plotting)

cn_map() (in module spacec.plotting) compensate_cell_matrix() (in module spacec.preprocessing) coordinates_on_image() (in module spacec.plotting) count_patch_proximity_res() (in module spacec.plotting) create_pie_charts() (in module spacec.plotting)

D

distance_graph() (in module spacec.plotting)

downscale_tissue() (in module spacec.helperfunctions) dumbbell() (in module spacec.plotting)

F

filter_data() (in module spacec.preprocessing)

filter_interactions() (in module spacec.tools) format() (in module spacec.preprocessing)

I

identify_interactions() (in module spacec.tools)

L

label_tissue() (in module spacec.tools)

launch_interactive_clustering() (in module spacec.tools)

M

make_anndata() (in module spacec.helperfunctions) ml_predict() (in module spacec.tools) ml_train() (in module spacec.tools) module spacec spacec.helperfunctions spacec.plotting spacec.preprocessing spacec.tools

N

neighborhood_analysis() (in module spacec.tools)

P

patch_proximity_analysis() (in module spacec.tools)

plot_top_n_distances() (in module spacec.plotting) ppa_res_donut() (in module spacec.plotting)

R

read_segdf() (in module spacec.preprocessing)

remove_noise() (in module spacec.preprocessing) remove_rare_cell_types() (in module spacec.tools)

S

save_labelled_tissue() (in module spacec.tools) segmentation_ch() (in module spacec.plotting) show_masks() (in module spacec.plotting) spacec module spacec.helperfunctions module

spacec.plotting module spacec.preprocessing module spacec.tools module stacked_bar_plot() (in module spacec.plotting)

T

tissue_lables() (in module spacec.plotting)

tm_viewer() (in module spacec.tools) tm_viewer_catplot() (in module spacec.tools)

Z

zcount_thres() (in module spacec.plotting)