Examples

• CODEX human healthy colon
  • Inspecting the dataset
  • Reproducing the cell type annotation
  • Getting insights into cell type distribution
  • Identifying spatial neighborhoods
  • Perform Cell-Cell distance analysis
• CODEX human healthy intestine
  • Cell type composition
  • Vessel tracing
  • Patch proximity analysis
• IMC Breast Cancer
  • Scatter plot
  • Cell type composition
  • Neighborhood analysis
  • Spatial context map
  • Barycentric coordinate plots
  • Patch proximity analysis
• MERFISH Brain analysis
  • Scatter plot
  • Cell type composition
  • Neighborhood analysis
  • Spatial context map
  • Barycentric coordinate plots
• MIBI-TOF human colorectal carcinoma
  • Scatter plot
  • Cell type composition
  • Neighborhood analysis
  • Spatial context map
  • Barycentric coordinate plots
  • Patch proximity analysis
• Visium mouse brain
  • Clustering
  • Scatter plot
  • Cell type composition
  • Neighborhood analysis
  • Spatial context map
  • Barycentric coordinate plots